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Une nouvelle version du site de la plateforme de bioinformatics de montpellier est en ligne depuis juillet 2026.
ATGC, Montpellier Bioinformatics Platform has migrated to a new plateform since July, 2026.
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PhyML 3.0: new algorithms, methods and utilities
Please cite:
"New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0."
"New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0."
Guindon S., Dufayard J.F., Lefort V., Anisimova M., Hordijk W., Gascuel O.
Systematic Biology, 59(3):307-21, 2010.
Get the latest PhyML releases from GitHub.
PhyML data sets
These data sets were used to test the speed of the algorithm and its accuracy.Simulated data sets:
- 5000 data sets comprising the true 40-taxon trees and the corresponding 500-bp homologous sequences.
- 30 data sets comprising the true 100-taxon trees and the corresponding 500-bp homologous sequences.
- 30 data sets comprising the true 40-taxon trees and the corresponding 500-bp homologous sequences.
Two real data sets:
- RDPII data set (218 taxa, 4182 bp).
- rbcL data set (500 taxa, 1428 bp).
Contact: Webmaster, LIRMM.
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